PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099556.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 282aa    MW: 31215.3 Da    PI: 7.3607
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.2e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q 
  XP_011099556.1   4 SCNGCRVLRKGCSDKCSIRPCLewiknPDSQANATVFLAKFYGRAGLMNLINAGPQHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQN 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l+++
  XP_011099556.1  99 AVEAVLRGD 107
                     **9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4263109IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDKCS IRPCLEWIKN PDSQANATVF LAKFYGRAGL MNLINAGPQH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQNAV EAVLRGDPIT QMASDAAEIK  120
NGPPLKAYDI RHVNKEDNLC GSNDLHRVRT RCRFKRSGAK ARRSRVWVGS VEESGREEVH  180
RSPSHESSLS HQSEAVEANA ERESRRSESL ASAEIAEQVL DSAVQDERRA DDGEIELELT  240
LGFEPFKRDV KPKVLATKEA VGSVEDDAGL CKMELGLDYP AS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-100LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A022RX571e-136A0A022RX57_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000329381e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-89LOB domain-containing protein 41